Change log

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0.1.0

• Initial release

• Six-phase pipeline: MinHash sketching, LSH, banded Smith-Waterman alignment, graph construction, Leiden community detection, representative selection

• Clustering methods: Leiden (default), connected components, greedy

• Clustering mode presets: balanced, accurate, fast

• GPU-accelerated Smith-Waterman alignment via CuPy (optional)

• C/OpenMP alignment kernel with multi-threaded execution

• Output formats: TSV and CD-HIT-compatible

• Representative selection: longest, centroid, most_connected

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