Other software


We are grateful that you are exploring our software! If this software is of interest to you, our other software will likely be too. Please see other software below.


ClipKIT

ClipKIT

A multiple sequence alignment trimming software for accurate phylogenomic inference

Publication PDF; Documentation; Source code


PhyKIT

PhyKIT

A broadly applicable command line toolkit with 30 (and counting) functions for analyzing and processing phylogenetic trees and multiple sequence alignments.

Advanced access article; Documentation; Source code


orthofisher

orthofisher

automated extraction of protein sequences from proteomes using profile Hidden Markov Models

Documentation; Source code


treehouse

treehouse

prune user inputted phylogenies or phylogenies in our database using an intuitive graphical user interface.

Publication PDF; Source code


ggpubfigs

ggpubfigs

create publication ready figures that are colorblind friendly using our collection of ggplot2 themes

Zenodo record; Source code