Phylogenetic comparative methods

• Phylo GWAS - Phylogenetic genome-wide association study

• Phylogenetic ANOVA / MANOVA - Phylogenetic ANOVA or MANOVA using RRPP (Adams & Collyer 2018)

• Phylogenetic GLM - Phylogenetic generalized linear model (supports discordance-aware VCV with -g)

• Phylogenetic Logistic Regression - Phylogenetic logistic regression for binary traits (Ives & Garland 2010)

• Phylogenetic Ordination - Ordination incorporating phylogenetic structure (supports discordance-aware VCV with -g)

• Phylogenetic path analysis - Compare causal DAGs via d-separation + PGLS (von Hardenberg & Gonzalez-Voyer 2013)

• Phylogenetic regression (PGLS) - Phylogenetic generalized least squares regression (supports discordance-aware VCV with -g)

• Phylomorphospace - Phylomorphospace visualization