Tree manipulation & utilities

• Branch length multiplier - Multiply branch lengths by a factor

• Chronogram - Time-calibrated tree with geological timescale (rectangular or circular)

• Collapse bipartitions - Collapse low-support bipartitions

• Internode labeler - Label internal nodes of a tree

• Last common ancestor subtree - Extract subtree from LCA of specified taxa

• Monophyly check - Test monophyly of a group of taxa

• Nearest neighbor interchange - Generate NNI tree rearrangements

• Print tree - Print ASCII representation of a tree

• Prune tree - Prune taxa from a tree

• Rename tree tips - Rename tip labels in a tree

• Root tree - Root or reroot a tree

• Subtree pruning and regrafting - Generate all SPR rearrangements for a specified subtree

• Tip labels - Print tip labels of a tree

• Transfer annotations - Transfer node annotations between trees (e.g., wASTRAL to RAxML/IQ-TREE)