Print tree

Print ASCII representation of a tree

Command identity

Canonical command:

print_tree

Handler:

print_tree

Aliases:

print, pt

Standalone executables:

pk_print_tree, pk_print, pk_pt

Categories:

Tree manipulation & utilities

Runtime interface

Synopsis

phykit print_tree <tree> [--remove] [--json]

Arguments

This table is generated from the live command parser. It is the authoritative source for accepted spellings, required arguments, types, defaults, and choices.

Argument	Required	Type	Default	Choices
tree	true	str	required	any
-r, --remove	false	boolean	false	any
--json	false	boolean	false	any

Output and errors

--json provides the command's structured JSON representation. Unless the guidance below states otherwise, results are emitted as command output. Invalid command syntax exits with status 2. Input validation and scientific limitations are described in the guidance below.

Guidance, interpretation, and examples

Print ascii tree of input phylogeny.

Phylogeny can be printed with or without branch lengths. By default, the phylogeny will be printed with branch lengths but branch lengths can be removed using the -r/--remove argument.

phykit print_tree <tree> [-r/--remove] [--json]

Options:
<tree>: first argument after function name should be a tree file
-r/--remove: optional argument to print the phylogeny without branch lengths
--json: optional argument to print results as JSON